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Associate Professor @UCSF Microbiology&Immunology | Dad, Husband| Studying the dynamic epigenome with Chromatin Biochemistry/ Biophysics and Single Cell Biology

@UCSF | G W Hooper Foundation
Joined July 2018
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Join us for Bay Area Chromatin Club ! First in person event for 2026- UCSF Genentech Hall, March 5, 1-5pm. Speakers from across the Bay. Bring a poster, hang out with old friends and make new ones! Register here and please RT: urldefense.com/v3/__https://…$
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Kudos to Dana Kennedy, for making this lovely, pressed flower cover image for her paper. "Pressed-flower art representing heterochromatin gene silencing in Schizosaccharomyces pombe. Each distinct flower symbolizes HP1/Swi6, Clr4, nucleosomes, and post-translational (cont)
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modifications (H3K9 methylation, orange; HP1/Swi6 phosphorylation, purple), illustrating H3K9me3 deposition by Clr4 and its recognition by phosphorylated HP1/Swi6. This design reflects how post-translational modifications enable productive epigenetic reader—writer feedback.
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Tour de force by @drkennedy93 ! doi.org/10.1093/nar/gkaf1244 HP1/Swi6 phosphorylation is required for H3K9 trimethylation spreading but not nucleation. Why? Phosphorylation tunes the bulk chromatin affinity into a regime where HP1 is specific for the H3K9me3 state and not H3K9me0.
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This also supercharges oligomerization. Together this focuses HP1 away from the substrates of Suv39/Clr4 and onto its products. In this way, it relieves competition with the n enzyme. Wonder if this is conserved ! Much more to examine.
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Question re: @BioRadLifeSci 491 Prep Cell: I have one, but need elution frit and tubing kit. Those are out of stock. The best advice I got from the sales rep is buy a whole new one ($7000) to get those <$100 items. Anyone know where to get such accessories? so far came up empty.
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Throughout my PhD working on phytochrome signaling I always looked up to and took inspiration from Dr Chory creative and important work. I am truly sad for this loss. A giant in the field.
One fo the giants is gone. Dr. Chory often offered kind guidance to me as a young scientist. She wasn't much older. She was a brilliant geneticist and plant biologist that continually defined a new edge. She will be missed in the plant science community.
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A preprint from the lab led by graduate student Dana R Kennedy. doi.org/10.1101/2024.10.25.6… Over 20 years ago, the Eissenberg lab showed that phosphorylation of HP1 is important for its silencing function. Why? Key observations from our study in fission yeast:
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7. We suspect that increased oligomerization by NTE phos further partitions the protein into heterochromatin foci and supports spreading. Thanks to great collaborators Rob Maxwell at UC Berkeley, the Chang lab’s @JoelLemiere and Catherine Tan, and Julian Braxton, now at Caltech.
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*"should say H3K9me2 to me3 conversion" in 6. Happy Halloween to all!! 👻🎃
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What it feels like to be a basic scientist amidst the broad shift toward translational research…
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Awesome!
BREAKING NEWS The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”
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Very excited to be hosting @levine_lab for the Basic Science a seminar at UCSF tomorrow ! Please everyone stop by you are in for a treat !
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Soon in Edinburgh for a few days to learn some cool methods and visit the MRC. Haven’t been in over 25 years! Looking forward.
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