Bioinformatics Göttingen (@BioinfoGoe) header
Bioinformatics Göttingen (@BioinfoGoe) profile picture

Bioinformatics Göttingen

@BioinfoGoe

This is the Twitter account of the Göttingen Bioinformatics community

 Göttingen, Germany
Joined May 2018
  • Tweets225
  • Following68
  • Followers462
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Photo by Bioinformatics Göttingen (@BioinfoGoe)Photo by Bioinformatics Göttingen (@BioinfoGoe)Photo by Bioinformatics Göttingen (@BioinfoGoe)Photo by Bioinformatics Göttingen (@BioinfoGoe)Photo by Bioinformatics Göttingen (@BioinfoGoe)Photo by Bioinformatics Göttingen (@BioinfoGoe)
Upcoming bioinformatics seminar: Speaker: Dr. Rickard Sjögren, Sartorius Corporate Research, Umeå, Sweden Title: How Sartorius uses machine learning to quantify biology Today, 4:30 pm CET Zoom link: uni-goettingen.zoom.us/j/971…
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Bioinformatics Göttingen retweeted
Patrick Cramer (@mpgpresident) profile picture
Patrick Cramer@mpgpresident27 Oct 2021
Honored to join Ugur Sahin of BioNTech and Tzachi Pilpel @TPilpel @WeizmannScience for the Max Planck Forum on „#Covid19: From Vaccination to Medication“. Online on Nov 11, 2021 at 6.30 pm CET. mpg.de/17720994/covid-19-fro…
Image from Patrick Cramer (@mpgpresident)
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New from Göttingen bioinformatics: SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts academic.oup.com/bioinformat…
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts

SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts

AbstractSummary. SpacePHARER (CRISPR Spacer Phage–Host Pair Finder) is a sensitive and fast tool for de novo prediction of phage–host relationships via ide

academic.oup.com
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Bioinformatics Göttingen retweeted
Jörg Stülke (@JorgStulke) profile picture
Jörg Stülke@JorgStulke5 Oct 2021
Start of a nice evening with @TiagoPedreira8 and twitterless Christoph Elfmann to celebrate papers on SynWiki and SubtiWiki that have been accepted for Protein Science @ProteinSociety and @NAR_Open @IMPRS_GS @uniGoettingen
Image from Jörg Stülke (@JorgStulke)
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Current #SARSCoV2 VOCs have sampled only a fraction of possible spike domain changes, rising the potential for further change in virus replication and transmission properties over the coming years. Paper co-authored by EVBC members @robertson_lab @my_pvt doi.org/10.1093/ve/veab067
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New bioinformatics paper from Göttingen: App-SpaM: Phylogenetic placement of short reads without sequence alignment academic.oup.com/bioinformat…
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Bioinformatics Göttingen retweeted
Ewan Birney (@ewanbirney) profile picture
Ewan Birney@ewanbirney14 Oct 2021
This is a great paper and a great thread explainer by Moritz, who, with Harald Vohringer developed the key analytic model to track SARS-CoV-2 variants across space and time using the awesome @CovidGenomicsUK dataset in the UK.
Moritz Gerstung (@MoritzGerstung) profile pictureMoritz Gerstung@MoritzGerstung14 Oct 2021
Just out - the rise and fall of SARS-CoV-2 lineages in England. In the last 1.5yrs the UK has been a bell weather for SARS-CoV-2 evolution and genomic epidemiology thanks to the data sequenced by @CovidGenomicsUK and @sangerinstitute. Let's recap. >> nature.com/articles/s41586-0…
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Bioinformatics Göttingen retweeted
Uni Göttingen (@uniGoettingen) profile picture
Uni Göttingen@uniGoettingen14 Oct 2021
Thinking about studying Biophysics and the Physics of Dynamic Complex Systems? Our Uni might be just the place! An opportunity to be taught by researchers who have revealed new worlds to us. This fun clip also explains what #Biophysics means and lots more! youtube.com/watch?v=2DEQm-dz…
Study Focus: Biophysics and Physics of Complex Systems

Study Focus: Biophysics and Physics of Complex Systems

Interested in studying Biophysics and the Physics of Dynamic Comple...

youtube.com
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This afternoon, Fred Wolf, Theoretical Neurophysics, MPI of Dynamics and Self-Organization, #Goettingen, will give a talk in our seminar: Circuit-level optimization principles in the visual cortex 4:30 pm CEST, at uni-goettingen.zoom.us/j/921… Everybody is welcome to join!
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There will be a talk in our #Bioinformatics seminar by Florin Manea, @uniGoettingen, on Combinatorial algorithms for subsequences uni-goettingen.zoom.us/j/917… Wed July 7th, 4:30pm Everybody is welcome to join!
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There will be a talk in our CIDAS seminar by @solonpissis , Vrije Universiteit Amsterdam Title: “On String Sanitization" Time: today (8. April), 5 pm CEST. Link: uni-goettingen.zoom.us/j/973… Meeting ID: 973 7000 9782 Passcode: 648518
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Bioinformatics Göttingen retweeted
Uni Göttingen (@uniGoettingen) profile picture
Uni Göttingen@uniGoettingen1 Apr 2021
Heute ist sein erster Tag: Mit einer feierlichen Veranstaltung tritt unser neuer Präsident Prof. Dr. Metin Tolan sein Amt an. Die Veranstaltung wird ab 19 Uhr live aus unserer Aula übertragen. Weitere Infos unter uni-goettingen.de/amtsantrit… und unter uni-goettingen.de/de/3240.ht…
Image from Uni Göttingen (@uniGoettingen)
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Stefan Glöggler, Research Group NMR Signal Enhancement, @mpi_bpc will give a talk in our joint #goettingen #bioinformatics seminar today. Everybody is welcome to join us. Title: Making the most out of nuclear spins Wed March 3rd, 4:30pm CET Location: uni-goettingen.zoom.us/j/992…
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New pub from Göttingen bioinformatics: bmcbioinformatics.biomedcent…
S-conLSH: alignment-free gapped mapping of noisy long reads

S-conLSH: alignment-free gapped mapping of noisy long reads

BMC Bioinformatics - The advancement of SMRT technology has unfolded new opportunities of genome analysis with its longer read length and low GC bias. Alignment of the reads to their appropriate...

link.springer.com
Bioinformatics Göttingen retweeted
Uni Göttingen (@uniGoettingen) profile picture
Uni Göttingen@uniGoettingen8 Feb 2021
And if you really #LoveYourData, you might want to share it #OpenAccess? The #OpenAccess HelpDesk is now taking telephone queries as well as answering individual queries by email. Queries welcome in English and German - open-access.net/en/informati… @openaccessnet
Text reads Open Access Helpdesk (+49) 07531883366. Beloved green frog muppet hugs old-fashioned black phone with dial. Expression is of frog remorse. This is a frog who needs help #OpenScience.

ALT Text reads Open Access Helpdesk (+49) 07531883366. Beloved green frog muppet hugs old-fashioned black phone with dial. Expression is of frog remorse. This is a frog who needs help #OpenScience.

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Bioinformatics Göttingen retweeted
Livia Caizzi (@LCaizzi) profile picture
Livia Caizzi@LCaizzi8 Feb 2021
And.... a snowstorm!!! Göttingen, you always surprise me 😉 #snowstorm #goettingen #germany #mpibpc
Image from Livia Caizzi (@LCaizzi)
Image from Livia Caizzi (@LCaizzi)
Image from Livia Caizzi (@LCaizzi)
Image from Livia Caizzi (@LCaizzi)
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Insertions and deletions as phylogenetic signal in alignment-free sequence comparison biorxiv.org/content/10.1101/…
Insertions and deletions as phylogenetic signal in alignment-free sequence comparison

Insertions and deletions as phylogenetic signal in alignment-free sequence comparison

Most methods for phylogenetic tree reconstruction are based on sequence alignments; they infer phylogenies based on aligned nucleotide or amino-acid residues. Gaps in alignments are usually not used...

biorxiv.org
Bioinformatics Göttingen retweeted
Malfoy (@BQPMalfoy) profile picture
Malfoy@BQPMalfoy30 Jan 2021
This is brilliant
bioRxiv Bioinfo (@biorxiv_bioinfo) profile picturebioRxiv Bioinfo@biorxiv_bioinfo29 Jan 2021
Strobemers: an alternative to k-mers for sequence comparison biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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Alignment-free Genomic Analysis via a Big Data Spark Platform academic.oup.com/bioinformat…
Alignment-free Genomic Analysis via a Big Data Spark Platform

Alignment-free Genomic Analysis via a Big Data Spark Platform

AbstractMotivation. Alignment-free distance and similarity functions (AF functions, for short) are a well-established alternative to pairwise and multiple

academic.oup.com
Most modern phylogenetic inference methods rely on the gradient of the likelihood function w.r.t. the branch lengths (for optimization and/or Bayesian inference). [1/5]
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