Temple Coline retweeted
Celebration this week for the brillant PhD viva voce of Dr. @NuriaFontde 🎉📖
Great homecoming of @ColineTemple and @johan_rollin to enjoy this moment
Another PhD for the @inextvir project
Temple Coline retweeted
New publication with @johan_rollin :
Cont-ID: #bioinformatics tool to check for cross-contamination between samples when using HTS technologies to detect viruses
rdcu.be/dowMQ
Improving the reliability of diagnostics thanks to @inextvir & GHU of @CGIAR Genebanks
Very proud to share a big part of my PhD! A study combining HTS for plant virus detection and growers' perception to have a holistic overview of the risks associated with viruses in Belgium.
doi.org/10.3389/fsufs.2023.1…
Thanks to all the producers that were met and all the co-authors: Arnaud Blouin, @SJTindale , Stephan Steyer, Kevin Marechal, @Be_Phytopath
Temple Coline retweeted
Very excited to finally share my first first-author paper!🎉It was such a big work that it wouldn't have been possible without the help of all the co-authors, the funding agencies, and, especially, @Be_Phytopath . frontiersin.org/articles/10.…
Temple Coline retweeted
Very glad to see the big piece of my PhD published today in @JournalSpectrum about virus ecology and diversity in Belgian agro-ecosystems, and the discovery of 37 novel viruses in wild and cultivated grasses. doi.org/10.1128/spectrum.048… @Be_Phytopath
@UniversiteLiege
@frsFNRS
ALT Photo of Antheit barley field in 2018 (Copyright F. Maclot)
ALT Photo of Héron grazed pasture in 2018 (Copyright F. Maclot)
ALT Photo of Latinne grassland in 2018 (Copyright F. Maclot)
Temple Coline retweeted
Our collaborative work on PhCMoV, managed by @ColineTemple, is highlighted by @plantdisease :
apsnet.org/about/newsroom/re…
Thanks again to the colleagues for the great exchanges (that are ongoing now for another publication)
Temple Coline retweeted
Editor’s Pick! Across 8 labs in 5 countries, @ColineTemple et al. collaborated on an in-depth characterization of Physostegia chlorotic mottle virus.
🔓doi.org/10.1094/PDIS-12-21-2…
@KrisDeJonghe2 @HeikoZiebell @YahyaZAGaafar @yan_xiaohua @DenisKutnjak @AnaVucurovic @Be_Phytopath
ALT Pictures of natural Physostegia chlorotic mottle virus (PhCMoV)-infected plants. A and B, symptoms of PhCMoV on infected Solanum lycopersicum fruits (Ro_SL1) and leaves (Nd_SL1); C and D, Solanum melongena fruit (Fr_SM4) and leaves (Be_SM1); E and F, Cucumis sativus fruits (Nd_CS1) and leaves (Ge_CS1); and G and H, Helleborus leaves (Nd_H1) Galinsoga parviflora (Be_GP1). No coinfections with other viruses occurred in these samples.
Temple Coline retweeted
Wanna use reliably #HTS technologies in your lab for plant pathogens and pests detection ?
All you have ever wanted to know is in our new guidelines:
doi.org/10.24072/pcjournal.1…
->58 co-authors
->For any pest, technology & matrix
->For researchers and diagnosticians
Temple Coline retweeted
Monitoring cross-contamination by an Alien Control when applying high throughput sequencing for #virus detection. Our paper is out:
apsjournals.apsnet.org/doi/1…
#Diagnostic #HTS #NGS #PlantHealth #validation
@johan_rollin
@phytofrontiers @plantdisease @BiovIntCIAT_eng @inextvir
PhCMoV in the field... still and always
(20 symptomatic plants / 250)
How did it go unnoticed all these years ?? 🤔
Temple Coline retweeted
Published today: Guidelines for using HTS technologies in plant pest diagnostic (part 1):
onlinelibrary.wiley.com/doi/… (open access soon)
All you need to know to start using HTS
With >50 scientist from 40 countries & 35 labs
From @ValitestProject
#sequencing #planthealth
Temple Coline retweeted
🎉PRESENTING🎉 126 VIRUSES, INCLUDING 80 NEW SPECIES, FROM OUR STUDY:
"In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem"
Live now @biorxivpreprint:
biorxiv.org/content/10.1101/…
Here's a short🧵on our findings:
Temple Coline retweeted
[#phimscience] ALL ABOUT #VANA & #Metagenomics @PhytopathologyJ @PHIM_research @UPvbmt @Cirad @UniofOxford @UniversiteLiege @AgroBioTech #ITRA @INRAE_UMR_DGIMI #UMR_BFP @INRAE_France @enzazaden @agroscope @bcfam_asu @ASU @UCT_news @UCTIDM @Varsani_lab @Be_Phytopath @MOgliastro
[#viral #metagenomic] The ultimate #VANA biography by Oumaima Moubset et al. #virus #diversity #plant #insect #epidemiology #ecology
apsjournals.apsnet.org/doi/a…
Temple Coline retweeted
Our new VirHunter #DeepLearning method is in press. It helps to detect #viruses in #HTS samples. Kudos to brilliant #PhD students @gregoruar @MaryamKhalili62 and all the @inextvir team #bioinformatics #research @univbordeaux @CNRSAquitaine @DepartementSBM
frontiersin.org/articles/10.…
Very excited to share my first first-author paper!
And I was not alone... 🤝🎉🤝🎉
Thanks to all the co-authors for this very nice international collaboration!
@Be_Phytopath @KrisDeJonghe2 @HeikoZiebell @ViromeHunter @DenisKutnjak & all
doi.org/10.1094/PDIS-12-21-2…
Temple Coline retweeted
It wouldn't be an exciting holiday without @ViromeHunter casually looking for viruses!
Temple Coline retweeted
Upcoming challenges in HTS for improving viral detection in planta by @johan_rollin . Impresive approach!!!
Temple Coline retweeted
When sociology meets agriculture and virology. Evaluation of tomato virus-related Risk by @ColineTemple . Great work !!!
