the MRtrix3 team (@MRtrix3) header
the MRtrix3 team (@MRtrix3) profile picture

Stay up to date with all the latest updates from the MRtrix3 team!

Joined January 2018
Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)Photo by the MRtrix3 team (@MRtrix3)
We are pleased to announce the immediate release of MRtrix 3.0.8. This is a bug fix release, fixing issues with MRView on macOS, amongst other issues. We recommend users upgrade as soon as practical. All the best from the MRtrix3 team! mrtrix.org/2025/10/22/mrtrix…
2
11
476
We're proud to announce the release of MRtrix 3.0.7! This is a bug fix release, to address a couple of issues that became apparent after the 3.0.5 release. We recommend users upgrade as soon as practical. All the best from the MRtrix3 team! mrtrix.org/2025/07/28/mrtrix…
7
27
772
It's been a while, but we're proud to announce the release of MRtrix 3.0.5! This is a bug fix release. We recommend users upgrade as soon as practical. All the best from the MRtrix3 team! mrtrix.org/2025/05/08/mrtrix…
2
9
469
An incredible piece of work from Marlene Tahedl, which will hopefully be very useful to many researchers using diffusion MRI and @MRtrix3 in particular! rdcu.be/d9Q7f
1
9
28
1,648
the MRtrix3 team retweeted
After @MRtrix3 was a finalist at the Australian Museum @eurekaprizes ceremony, I conducted an interview with @ARDC_AU to speak about my involvement with that project and my opinions on the research software ecosystem.
🧠 A Senior Research Officer at @TheFlorey, Dr Robert Smith @Lestropie has worked on developing sophisticated processing and reconstruction techniques for analysing image data, especially diffusion magnetic resonance imaging (#MRI) with a view to advance #BrainScience. One project he's been invovled in is #MRtrix3, a freely available #software package used for guiding clinical decision making in #neuroscience. "For instance, it’s used to determine surgical candidates and margins for brain tissue resection," Rob reports. One of their core analysis pipelines has been applied across a very broad spectrum of neurological disorders. The software was also used to investigate the effects of microgravity on brain microstructure and morphology. In the 5 years since the article decribing MRtrix3was published, 2,000 citations have been recorded. Having a low barrier to access and not requiring registration, though, the software has most certainly seen more usage. There are also nearly 2,000 accounts on the community forum, which is an under-estimate of the user base considering that registration is optional. Seeing the issues and feature requests coming from the community, it's natural for Rob to continually and diligently maintain the software. "I don’t think that I ever made a conscious decision of 'I’m going to maintain research software' ... When you have a personal investment in software you develop a vested interest in ensuring it does what it claims, does it well, and expands in its capabilities." Earlier this year, MRtrix3 was named a finalist for the 2024 ARDC-sponsored #Eureka Prize for Excellence in #ResearchSoftware. "It’s obviously great to have individual software projects recognised for their contribution to research, but for me the key impact of this award is the promotion of research software as a domain worthy of recognition. This prize is one of many steps to recognise software as a reportable and valuable output of research." 🔗 Read more about MRtrix3 and Rob's experience in the latest of our monthly interviews with leading research software engineers (#RSEs) in Australia > ardc.edu.au/article/shaping-… #ResearchSoftwareAU
4
1
23
1,601
🧠 A Senior Research Officer at @TheFlorey, Dr Robert Smith @Lestropie has worked on developing sophisticated processing and reconstruction techniques for analysing image data, especially diffusion magnetic resonance imaging (#MRI) with a view to advance #BrainScience. One project he's been invovled in is #MRtrix3, a freely available #software package used for guiding clinical decision making in #neuroscience. "For instance, it’s used to determine surgical candidates and margins for brain tissue resection," Rob reports. One of their core analysis pipelines has been applied across a very broad spectrum of neurological disorders. The software was also used to investigate the effects of microgravity on brain microstructure and morphology. In the 5 years since the article decribing MRtrix3was published, 2,000 citations have been recorded. Having a low barrier to access and not requiring registration, though, the software has most certainly seen more usage. There are also nearly 2,000 accounts on the community forum, which is an under-estimate of the user base considering that registration is optional. Seeing the issues and feature requests coming from the community, it's natural for Rob to continually and diligently maintain the software. "I don’t think that I ever made a conscious decision of 'I’m going to maintain research software' ... When you have a personal investment in software you develop a vested interest in ensuring it does what it claims, does it well, and expands in its capabilities." Earlier this year, MRtrix3 was named a finalist for the 2024 ARDC-sponsored #Eureka Prize for Excellence in #ResearchSoftware. "It’s obviously great to have individual software projects recognised for their contribution to research, but for me the key impact of this award is the promotion of research software as a domain worthy of recognition. This prize is one of many steps to recognise software as a reportable and valuable output of research." 🔗 Read more about MRtrix3 and Rob's experience in the latest of our monthly interviews with leading research software engineers (#RSEs) in Australia > ardc.edu.au/article/shaping-… #ResearchSoftwareAU
1
3
1
5
1,758
Congratulations to the @MRtrix3 team on being finalists in the @ARDC_AU #EurekaPrize for Excellence in Research Software! #MRTrix3 is used to study brain development, neurological diseases, and even to plan neurosurgery. Shoutout to the team on an outstanding achievement! #NCRIS
9
1
31
1,368
the MRtrix3 team retweeted
Congratulations to Dr Donald Tournier (@jdtournier), Dr Robert Smith (@Lestropie) and the @MRtrix3 Team who are finalists for the 2024 Australian Museum Eureka Prize - #Australia's premier science awards for discovery, invention, communication, innovation and leadership.
1
5
44
2,338
Congratulations @MRtrix3! MRtrix has global impact🌏 🧠It's used to study brain development and neurological diseases 🧑‍⚕️It enables neurosurgeons to perform novel procedures with improved patient outcomes 🚀It's even used by @esa to study effects of space travel #NCRISImpact
MRtrix3 @MRtrix3 is a finalist in the @ARDC_AU Eureka Prize for Excellence in Research Software. Learn more: youtu.be/TgcIFnULhns #EurekaPrizes
2
4
16
918
MRtrix3 @MRtrix3 is a finalist in the @ARDC_AU Eureka Prize for Excellence in Research Software. Learn more: youtu.be/TgcIFnULhns #EurekaPrizes
8
4
29
2,421
#MediaAlert: Australian-led @MRtrix3 team announced as #EurekaPrizes Finalists Proud to support #MRtrix3, used by scientists and doctors globally to map brain connections with MRI data - to study and treat disease Congratulations @jdtournier @Lestropie! australian.museum/get-involv…
1
11
36
1,946
Replying to @MRtrix3
@MRtrix3 workshop was amazing! Thank all the speakers and the organizing team!! @chunhungyeh
4
5
462
Our next MRtrix workshop is less than 4 weeks away! There are still places available if you’re interested – you can sign up via the website 👇 mrtrix.org/2024/01/20/next-m…
4
2
1,346
#NewPaper supported by NIF @TheFlorey: Exploring individual fixel-based white matter abnormalities in epilepsy doi.org/10.1093/braincomms/f… @MangorPedersen @heathpardoe @Lestropie @ingridscheffer
6
2
19
3,385
Important study comparing filtering approaches - SIFT2 by @MRtrix3 @Lestropie seems to finish on top. For binary, metrics for SIFT2 do not make sense IMO (as it is not designed to discard any streamlines)
1/5 Working with whole brain tractograms is challenging. Don't miss this new paper to learn more about why 👉 sciencedirect.com/science/ar… Another difficult thing is to compare different #tractography algorithms 👇
1
3
7
1,484
Another @MRtrix3 workshop successfully delivered - thanks to @dchristiaens for organising! 👏 And now onto some more serious business... 🍻
1
1
22
1,758