Empowering biological data science
Joined May 2024
- Tweets50
- Following862
- Followers53
- Likes9
The Human Gut Cell Atlas dataset is now available for free access through the OmnibusX Multi-omics Database!
🔗 Explore for free: omnibusx.ai/studies/doi.org.…
#SingleCell #HumanCellAtlas #HCGA #Database #Bioinformatics
A cell does not grow simply because an external growth signal, such as insulin, tells it to. Before committing to growth, it first needs to know whether enough nutrients and energy are available.
This decision is coordinated through mTORC1.
youtu.be/2mvtnl4lM2Y?si=MgrQ… via @YouTube
Tabula Sapiens 2.0 is now available for free, real-time exploration in OmnibusX!
Explore 1.1M+ cells across 28 normal human tissues for tissue markers, toxicology, oncology, and cell-type-specific gene expression.
🔗 omnibusx.ai/studies/doi.org.…
Now available for free access in the OmnibusX database!
This large human microglia atlas for Alzheimer’s disease profiles more than 800,000 myeloid cells and nuclei from over 1,600 donors.
Explore now at: omnibusx.ai/studies/doi.org.…
#SingleCell #AlzheimersDisease #Microglia
Meet GeneExplorer: Evidence for target discovery and validation
From DNA mutations to RNA expression, protein expression, pathways, diseases, drugs, clinical trials, and literature: gene.omnibusx.ai
Free summer access: Jul 1 - Sep 1, 2026
#MultiOmics #Drugdiscovery
You ask a biological question. Cortex plans the workflow, runs validated pipelines, reasons across results, and verifies findings with PubMed, arXiv, and curated biological knowledge.
Contact us at [email protected] to try now!
youtu.be/lAAXSTM7vnM
Cancer cells, SPP1⁺ macrophages, and FAP⁺ fibroblasts can form a collagen-rich barrier that blocks T cells and may suppress TLS formation.
#CancerBiology #TLS #ImmunoChemotherapy #CancerTherapy #SingleCell #OmnibusXEdu
youtu.be/4erJ2DFr0pc?si=8HQn… via @YouTube
Inspired by brilliant presentations and ideas from #AACR26, we are excited to introduce 3D exploration mode for spatial data analysis in OmnibusX.
Now supported for:
- CosMx
- Xenium
- MERSCOPE
- Slide-seq
youtu.be/BFsmK9ZrI5Q?si=8uOn… via @YouTube
How do tertiary lymphoid structures form?
We explain TLS formation and show how spatial technologies can reveal TLS-like organization in real tumor data.
#TLS #TumorImmunology #SpatialTranscriptomics #CancerBiology #OmnibusXEdu
youtu.be/FhV7jXs7z1w?si=FdGx… via @YouTube
Now available in OmnibusX with free access:
Single-cell spatial transcriptomic analysis of human skin anatomy
🔗omnibusx.ai/studies/doi.org.…
Summary: MERFISH (@vizgen_inc ) | 114 samples | 22 donors | 15 anatomic sites | 1.2 million cells
March is National Kidney Month!
At OmnibusX, we provide tools that support kidney research, from open access to curated public datasets to interactive analysis tools.
#NationalKidneyMonth #WorldKidneyDay #MultiOmic #scRNA #spatial #BulkRNA
blog.omnibusx.com/decoding-t…
OmnibusX Feature Highlights gallery!
A quick visual tour of what you can do across scRNA-seq, scATAC-seq, spatial, bulk RNA-seq & more, built from our past campaign flyers.
blog.omnibusx.com/feature-hi…
#RNA #scATACseq #spatialomics #scRNAseq
Meet Sentinel by OmnibusX, the platform to move from data to discovery with confidence.
Build custom, reproducible cell atlases with a few clicks:
-AI-Assisted Curation
- Integrated Analysis
- ML-Ready Data
Start building today: [email protected]
326 million cells. 1 peer-reviewed publication. 1 ASHG exhibition. 0 lines of code required.
That was OmnibusX in 2025.
2026? We're bringing AI-native analysis to single-cell research with Sentinel.
Watch our year in review!
youtu.be/Y3Qh-u8OQmo?si=76ep… via @YouTube
Free Exploration: 10 Million Human PBMCs in a Single Experiment!
Generated by Parse Biosciences, this landmark dataset profiles:
- 18 immune cell types
- 90 cytokines × 1,092 perturbation conditions
- Strong statistical power
Try now at: omnibusx.ai/studies/doi.org.…
Introducing Tissue Segmentation in OmnibusX:
- Runs efficiently on standard laptops - no cloud infrastructure required
- Supports multiple tissue types
- Enables multi-level segmentation for annotation at different spatial scales
Read more here: blog.omnibusx.com/tissue-seg…
OmnibusX is a desktop platform that unifies multi-omics analysis, including bulk & single-cell RNA-seq, scATAC-seq, spatial transcriptomics, and metagenomics. All processes are run securely on your local machine. Check it out!
youtu.be/1pEObEabsSY?si=8gLg… via @YouTube
We are pleased to announce that OmnibusX now includes comprehensive metagenomics analysis, from raw FASTQ to interactive results.
All delivered in a secure, code-free desktop environment. See the flyer below for details.
Start your 2-month free trial: omnibusx.com/apps
OmnibusX retweeted
Want to dive into the datasets from our recent @NatureComms paper? 🌱📊
Check out this guide on how to explore and analyze the #drought #recovery #data with @OmnibusXLab
Check out the paper and datasets: nature.com/articles/s41467-0…
Tutorial: youtu.be/YI0RVFiQnMs
We are pleased to announce the publication of our research article, "OmnibusX: A unified platform for accessible multi-omics analysis," in the journal PLOS Computational Biology.
The full, open-access article is available to read here:
doi.org/10.1371/journal.pcbi…