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Salzman Lab

@SalzmanLab

Official Twitter of the Salzman research group at Stanford Biomedical Data Science

 Stanford, CA
Joined June 2017
  • Tweets58
  • Following22
  • Followers301
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Salzman Lab retweeted
Tavor Baharav (@TBaharav) profile picture
Tavor Baharav@TBaharav12 Apr 2024
Thrilled to share our new publication in PNAS on OASIS, an alternative to Pearson’s X² for analyzing contingency tables. Made it to the front page! 1/ 7
Image from Tavor Baharav (@TBaharav)
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Salzman Lab retweeted
Matt Durrant (@mgdurrant) profile picture
Matt Durrant
@mgdurrant22 Mar 2023
I can confirm that the NOMAD analysis method and the accompanying software is a game-changer for sequence analysis and discovery. Check this paper out! biorxiv.org/content/10.1101/…
NOMAD2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

NOMAD2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

NOMAD is a new, unsupervised, reference-free, and unifying algorithm that discovers regulated sequence variation through statistical analysis of k -mer composition in DNA or RNA sequencing experime...

biorxiv.org
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NOMAD2 is an unsupervised, reference-free, ultra-fast next generation of NOMAD, revealing new insights into cancer transcriptomes. Joint work with @salzmanlab. Many thanks to all for great collab! biorxiv.org/content/10.1101/…
NOMAD2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

NOMAD2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

NOMAD is a new, unsupervised, reference-free, and unifying algorithm that discovers regulated sequence variation through statistical analysis of k -mer composition in DNA or RNA sequencing experime...

biorxiv.org
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Salzman Lab retweeted
Tavor Baharav (@TBaharav) profile picture
Tavor Baharav@TBaharav17 Nov 2022
Had a blast at #biodata22! Was great to present and get feedback on NOMAD, our recent work for reference-free inference biorxiv.org/content/10.1101/….
Image from Tavor Baharav (@TBaharav)
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Salzman Lab retweeted
LCG UNAM (@lcgunam) profile picture
LCG UNAM@lcgunam15 Nov 2022
"NOMAD is a single reference-free ‘omic algorithm for biological discovery across the tree of life" Julia Salzman @SalzmanLab en #FrontiersInGenomics HOY martes 15 nov 5pm #EnVivo #EnLínea lcg.unam.mx/frontiers/live @ccg_unam @ibt_unam @unammorelos
Image from LCG UNAM (@lcgunam)
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Tabula Sapiens is a first-draft single cell transcriptomic atlas of 2 human donors, 14 organs, and 150,000 cells. This collaborative project provides a molecular characterization of cellular diversity in the human body. tabula-sapiens-portal.ds.czb… Learn more ⤵️ (1/5)
Image from Chan Zuckerberg Biohub Network (@czbiohub)
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In our latest Tabula contribution, we share a single-cell transcriptomic atlas of the mouse lemur, comprising data from >220,000 single cells representing >750 defined cell types from 27 organs: the Tabula Microcebus. Explore the data: tabula-microcebus.ds.czbiohu… Learn more (1/4)
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Check out this new approach for finding gene fusions from my colleague @salzmanlab in @StanfordBiochem #cancer #rnaseq #statistics biorxiv.org/content/10.1101/…
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Big congrats to Julia Salzman @StanfordMed and Caroline Horn for the release of their new paper on biorxiv! biorxiv.org/content/early/20…
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Circular RNA In Invasive and Recurrent Clinical Nonfunctioning Pituitary Adenomas: Expression Profiles and Bioinformatic Analysis. dlvr.it/QXgkV4
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Salzman Lab retweeted
Lior Pachter (@lpachter) profile picture
Lior Pachter@lpachter14 Dec 2017
An interesting story of a circular RNA and it's lincRNA partner from the Salzman lab journals.plos.org/plosgeneti…
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