Multiscale Interactions and Dynamical Systems Theme Lab @sabanciu @alirana_atilgan @cananatlgn
Joined November 2018
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Our manuscript on 'Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics Simulations' was the #HighlightOfTheWeek. We love this work by @mberksoz and @cananatlgn - Watch out for more of our exciting findings on nanobiosensor design!
#HighlightOfTheWeek Transition from holo to apo conformation in a calmodulin-based calcium biosensor, GCaMP2.
#compchem
pubs.acs.org/doi/10.1021/acs…
midstlab retweeted
“Sen de Bilim için Koş!” Bilimsel Seyahat Desteği Başvuruları 30 Ocak tarihine kadar uzatıldı!
Başvuru koşullarına ve ilgili detaylara aşağıdaki bağlantı üzerinden erişebilirsiniz👇
bilimakademisi.org/sen-de-bi…
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The Statistical Physics Days are returning after their last edition in 2019!
27th IFG, July 3-5, 2025, Kadir Has University, Cibali Campus, Istanbul.
Keynote Speaker: Nihat Berker
Details: ifg27.khas.edu.tr/
#IFG27 @khasedutr
midstlab retweeted
Sonuncusu 2019’da gerçekleşen İstatistiksel Fizik Günleri (İFG), 27. IFG toplantısı ile geri dönüyor!
3-5 Temmuz 2025, Kadir Has Üniversitesi, Cibali Kampüsü, İstanbul.
Ana konuşmacı: Nihat Berker
Detaylar: ifg27.khas.edu.tr/
#IFG27 @khasedutr
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BAGEP 2025 Başvuruları Açıldı!
Son başvuru tarihi: 24 Ocak 2025, 16.00
Detaylı bilgiye aşağıdaki bağlantı üzerinden erişebilirsiniz 👇
bilimakademisi.org/14633-2/
One more of us moves on to the next level. @Busratyhn had a terrific master's thesis defence having a most stimulating discussion with our jury @TastanOznur Umut Şahin, Nihan Çelebi and co-advisors @cananatlgn & Ali Rana Atilgan. Great day outside offering the perfect final shot:
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European funders and organizations partner to promote sustainable research. Read more about the Heidelberg Agreement:
embo.org/press-releases/euro…
#ResearchFunding #Sustainability
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Canan Atilgan (@cananatlgn) presented the computational work done in her group to design fluorescent biosensors
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#Funding for #lifescientists in #Türkiye: join the info webinar on 24 October 13:30 EET hosted by @Tubitak
Register at ufukavrupa.org.tr/en/news/em…
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Bilim Akademisi üyesi Daron Acemoglu 2024 Nobel İktisat Ödülünü aldı!
“Kurumların oluşumu ve refaha etkilerine” ilişkin çalışmalarından dolayı verilen Nobel ödülü, ekonomi alanında dünyanın en prestijli bilim ödüllerinden biri olarak kabul ediliyor.
bilimakademisi.org/bilim-aka…
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Just wrapped up an amazing workshop, 'MIDST of Computational Design of Fluorescent Biosensors'! 🌟 Learned so much about genetically encoded fluorescent biosensors and the common design challenges from fantastic speakers @cananatlgn and @mberksoz !! @midstlab
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Bir araştırmacıyı onyıllarca izliyor, takdir ediyor, üstelik ne yaptığını gerçekten anlıyorsun. 😅 Sonra Nobel alınca ayrı bir neşe geliyor insana... David Baker'a çok sevindim. Hassabis&Jumper'a da alanımızı genişlettikleri için büyük saygı duyuyorum. Hepsine gönülden tebrikler.
BREAKING NEWS
The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”
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TolC, a crucial outer membrane protein, plays a major role in antibiotic resistance by acting as a channel for efflux pumps. Our study combines experimental and computational methods to reveal how TolC’s structural shifts enhance its ability to expel β-lactam antibiotics.
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Bilim Akademisi Deprem Koordinasyon Komitesi rehberliğinde hazırlanan "Bilim Akademisi Deprem Tartışmaları: Çok Daha İyisini Yapabiliriz!" yakında sizlerle!
@aydinalatan @nacigorur @fssalman @cananatlgn @Ali_Alpar @DefneUcer @cansezakaplan
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Dear Colleagues,
We are recruiting an endowed assistant professor at the Laufer Center for Physical and Quantitative Biology laufercenter.org/ The job description is posted in
apply.interfolio.com/150310
May I suggest you share this opportunity with colleagues?
Kind regards,
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So excited to share our latest preprint! It's also my first article! 🥳 🎉
biorxiv.org/content/10.1101/…
Happy to share our latest work on integrating computational techniques with cutting-edge HPC resources! We've concurrently executed thousands of free energy perturbation simulations to explore the mutational landscape of dihydrofolate reductase
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on @IT4Innovations Karolina cluster. Our adaptable pipeline offers a valuable tool for computational biology, providing deep insights into antibiotic resistance and beyond. This great work was possible with @midstlab @Busratyhn @ebrucetinecetin Ali Rana Atilgan @cananatlgn
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This MuMi scheme explains the single mutational landscape of GB1 IgG-Fc binding by focusing on dominant intermolecular hydrogen bonds. @midstlab @mugugaipen @cananatlgn
pubs.acs.org/doi/full/10.102…
Our new paper featuring “apple of our eye” method MuMi to rationalize deep mutational scanning experimental results, explained by our first-time corresponding author lab member @mugugaipen:
pubs.acs.org/doi/10.1021/acs… Our paper titled "Deciphering GB1’s Single Mutational Landscape: Insights from MuMi Analysis" is published in @JPhysChem! In this paper, we first delve into molecular dynamics simulations of the wild-type GB1-IgG-Fc complex