PhD Candidate | Plant Biological Sciences | Maize Epigenomics | Springer Lab
University of Minnesota, MN
Joined October 2016
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Jaclyn Noshay retweeted
Recent @PlantPhys publication with implications for maize breeding by @shanwai1234, @noshjac, and @SpringerNathan of @umncbs in collaboration with @sna8 of @gdcbisu, @pete_crisp of @UQ_News, and @taraenders of @HofstraU. @UMNresearch academic.oup.com/plphys/arti…
Jaclyn Noshay retweeted
Mind blowing.
The FTO gene is associated with obesity in humans. Plants don't have a homolog. What happens when you transgenically express the human FTO in plants?
Giant potatoes and rice
nature.com/articles/s41587-0…
Jaclyn Noshay retweeted
Excited to share @noshjac's last thesis chapter research. Monitoring accessible chromatin and DNA methylation in four maize genomes. Reveals that a large amount of variable methylation is due to shifting boundaries at the edge of methylated domains
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes biorxiv.org/cgi/content/shor… #biorxiv_plants
Jaclyn Noshay retweeted
Recent accepted manuscript in @GeneticsGSA led by @noshjac with the Plant Breeding Center affiliate labs of @SpringerNathan & @HirschCandice with implications for maize breeding in collaboration with @uga_genetics, @gdcbisu, @CornellCALS, & @UQ_News. academic.oup.com/genetics/ad…
Jaclyn Noshay retweeted
“Widespread imprinting of transposable elements and young genes in the maize endosperm”
Preprint online now - big thanks to collaborators @orionzhou @km_higgins26 @yanivbrandvain @SpringerNathan
Highlights below
Widespread imprinting of transposable elements and young genes in the maize endosperm biorxiv.org/cgi/content/shor… #biorxiv_plants
Jaclyn Noshay retweeted
The data from this project is now available at MaizeGDB including 26 genome pages, ~1 million gene models, 134 BLAST targets, and JBrowse instances for each genome with over 1,000 tracks of data. @corncolors @mbhufford @GrameneDatabase @HirschCandice
maizegdb.org/NAM_project
We are pleased to release genome assemblies and gene model annotations for 26 maize NAM inbreds for immediate use without restrictions. See nam-genomes.org/. Supported by NSF-1744001 with Matt Hufford (@mbhufford) Doreen Ware, Candice Hirsch (@HirschCandice) #NAMgenomes
Jaclyn Noshay retweeted
Really nice work led by Qing Li and Jing Xu
Qing Li, @SpringerNathan and co profile DNA methylation across inbred lines in maize and identify examples of differentially methylated regions that contain information not fully captured using SNPs
genomebiology.biomedcentral.…
Jaclyn Noshay retweeted
Together with @bogdanoviclab @ryanlisterlab, we review the current knowledge on cytosine DNA methylation across eukaryotes @JMolBiol, based on base-resolution DNA methylome profiling from divergent eukaryotes with a special focus on the animal kingdom. bit.ly/36VwqmS
Jaclyn Noshay retweeted
First it was apple color 🍎 , now they control chili 🌶 heat, are there any plant traits transposons don’t control?
Want a less spicy pepper? Allelic variations due to transposon insertions in putative amino transferase (pAMT) in Capsicum chinense contribute to quantitative differences in capsaicinoid content. doi.org/10.1111/tpj.14462
Jaclyn Noshay retweeted
Our review on anthocyanins from maize as natural colorants is finally out! rdcu.be/bPCA9 Thanks to @mnpaul47 and Jack Juvik for coauthoring this with me!
#purplecorn #maize #cornbreeding #anthocyanins #naturalcolors #amaize
Jaclyn Noshay retweeted
I highly recommend doing a postdoc with @SpringerNathan!
Interested in studying the sources of gene expression variation? We're looking for a postdoc to study the genetic and epigenetic variation in maize in collaboration with @HirschCandice and other colleagues. Apply at humanresources.umn.edu/conte… (search for job 332463)
Jaclyn Noshay retweeted
In this preprint biorxiv.org/cgi/content/shor… with Reza Hammond @orionzhou Blake Meyers, Candy Hirsch @SpringerNathan et al we provide a comprehensive view of small RNA populations in multiple tissues of a panel of maize inbreds and hybrids. Some of the key findings include:
Jaclyn Noshay retweeted
Our latest preprint analyzing TE expression dynamics in maize is now online! We assessed per-family TE expression in >800 published RNA-seq datasets to identify which TE families are transcribed and how transcription changes across development, genotypes, and hybrids.
Dynamic patterns of transcript abundance of transposable element families in maize biorxiv.org/cgi/content/shor… #biorxiv_genomic
Jaclyn Noshay retweeted
Excited for our new preprint led by @Lychee_Zhi in collaboration with @orionzhou @rafael_coletta Tifu Zhang @abrohamm1 @TheBuellLab @ndeleongatti @HirschCory @corngenes @SpringerNathan. biorxiv.org/content/10.1101/…
Jaclyn Noshay retweeted
Another warmup for Transposon Day on June 16: A recent special talk by Rob Martienssen on "Barbara McClintock’s Controlling Elements, Then and Now". cshl.edu/videos/rob-martiens… #transposonday2019 #transposon
Jaclyn Noshay retweeted
Benchmarking Transposable Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline biorxiv.org/cgi/content/shor… #biorxiv_genomic
Jaclyn Noshay retweeted
Molly Hammell: TEtoolkit: github.com/mhammell-laborato… Makes use of RNA-seq read distribution within TE transcripts to assign the location of multi mapping reads based on expectation maximization #TExGeneReg
Jaclyn Noshay retweeted
Retrotransposons are the major components of maize genomes but they are rarely seen transposing. This important study describes 30 new retrotransposon insertions and identifies lines that have high rates of transposition. pnas.org/content/early/2019/…
Jaclyn Noshay retweeted
Learning about our @_MarketSci program today @BTI_UMN : it began in @umncbs ~ 6 years ago to promote science communication to the public - awesome! cbs.umn.edu/market-science
