PlantCV is a suite of high-throughput phenotyping tools developed @DanforthCenter and maintained by @NoahFahlgren and @maliagehan
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ALT Promo for the 2023 Gordon Research Conference on Single-Cell Approaches in Plant Biology featuring speaker Dr. Malia Gehan from the Donald Danforth Plant Science Center. The conference is being held July 30 to August 4, 2023 in Ventura, CA, USA.
ALT Promo for the Single Cell Approached in Plant Biology Gordon Research Conference. Conference Dates: July 30 to August 4, 2023. Location: Ventura, California, United States.
ALT Images generated by RootDS. From left to right: Original image, binary image of diseased tissue, binary image of healthy tissue, merged pseudo-colored image, and binary image of full root system.
ALT Keith Slotkin presenting on zoom. Slide text: The central questions of this project: Do plants adapt their offspring to high CO2 levels? What mechanisms do they use? 6 diverse plant species including crops. Today’s CO2 vs. High CO2. Parent and offspring generations. Donald Danforth Plant Science Center logo.
ALT Overhead image of annual bluegrass in a research nursery. Notice the barrel distortion around the edges that looks like the image is rounding. This is caused by the camera lens but can be corrected using some simple calibration techniques.
ALT Binary segmentation mask of our target weed that we want to take data from. Coupled with calibration data, this image alone is enough to tell us about about size, shape, area, perimeter, solidity, and other useful pieces of information. Multiply this by 400 plants, 10 subtypes, and taken across 11 time periods, we have a large dataset ready to be analyzed. And all we did was take pictures.
ALT Closeup of our target weed. Not a whole lot, just pretty.
ALT Here we are using some python tooling developed be @plantcv that helps us take measurements from images. Notice the barrel distortion around the edges that looks like the image is rounding. This is caused by the camera lens but can be corrected using some simple calibration techniques.
