johannes zimmermann (@_jozimmermann) header
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johannes zimmermann

@_jozimmermann

..:: bioinformatician teaming up with microbes ::..

 kiel university
orcid.org/0000-0002-5041-1954
Joined February 2021
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Photo by johannes zimmermann (@_jozimmermann)
Inspiring and important read on the sources of uncertainty in metabolic modeling by David Bernstein et al from the Segre lab @dsegre doi.org/10.1186/s13059-021-0…
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis

Addressing uncertainty in genome-scale metabolic model reconstruction and analysis

Genome Biology - The reconstruction and analysis of genome-scale metabolic models constitutes a powerful systems biology approach, with applications ranging from basic understanding of...

link.springer.com
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I'm quite happy to share the news that the gapseq paper just got published: doi.org/10.1186/s13059-021-0…. It's about a novel method for metabolic pathway prediction and metabolic model reconstruction.
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabo...

gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabo...

Genome Biology - Genome-scale metabolic models of microorganisms are powerful frameworks to predict phenotypes from an organism’s genotype. While manual reconstructions are laborious,...

link.springer.com
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Endlich im #Duden :) Aber ob Dataismus und #Mikrobiom im Zusammenhang stehen?
Image from johannes zimmermann (@_jozimmermann)
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I like thinking of microbes as ''the guardians of metabolism'' as proposed by Paul Falkowski in 2008 (10.1126/science.1153213)
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