Maxime Borry (@notmaxib) header
Maxime Borry (@notmaxib) profile picture

Postdoctoral researcher in bioinformatics working on ancient DNA metagenomics. Find me there: https://nitter.cf/t.co/xvKgfGMCtv

Leipzig, Germany
Joined April 2009
Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)Photo by Maxime Borry (@notmaxib)
A k-mer index for the entire SRA, finally.
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We start back with our second sub session “Alternative Sources of microbiomes” with @notmaxib and Tziona Ben-gedalya having their tandem talk!! @archaeologyEAA
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We are all here #EAA2024 Kicked off with @spaam_community #spaam6 conference followed by opening ceremony at the beautiful site of Roman Fori. Don't miss out on tomorrow's session #854 👇 we are super excited to see you all!!!
Ready for the #EAA2024 ? We certainly are! If you are interested in discussing how we can better integrate archaeology and ancient metagenomics, join us on Friday, 30th August, in Room 25, 1st floor, building CU002! See the schedule and map below!! 🦠📷🎙️ @archaeologyEAA
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Ready for the #EAA2024 ? We certainly are! If you are interested in discussing how we can better integrate archaeology and ancient metagenomics, join us on Friday, 30th August, in Room 25, 1st floor, building CU002! See the schedule and map below!! 🦠📷🎙️ @archaeologyEAA
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Alphabetical order mismatch and 52 of 78 neighborhoods had wrongly merged data. I spend a lot of time teaching advanced inference methods, but boring research data management remains the most essential skill. And that includes auditing for merge mistakes.
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Taking identity-by-descent (IBD) analysis into the wild! biorxiv.org/content/10.1101/… In this preprint, we leverage novel genomic methods to estimate fine-scale gradients of relatedness in animals and highlight their many applications in the field of ecology and evolution.🐒🧬 [1/3]
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Maxime Borry retweeted
Are you running antiSMASH across many genomes? Check out multiSMASH, my simple wrapper that streamlines comparative BGC analyses by parallelizing antiSMASH runs and tabulating the results. Runs BiG-SCAPE too! WIP, so feedback and bug reports appreciated. github.com/zreitz/multismash…
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The eternal city of Rome will be the place to foster communication and collaboration among the most exciting fields of #Archaeology #metagenomics and #computerscience . Submit an abstract NOW for #EAA2024👇
🚨#EAA2024 Call for Abstracts OPEN NOW! Join our session number 854👇 How: Tandem or solo presentations When: Abstracts due Feb 8th (oral) or Apr 8th (poster) Is Rome too far? EAA offers online participation Submit at submissions.e-a-a.org/eaa202… More info e-a-a.org/EAA2024
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🚨#EAA2024 Call for Abstracts OPEN NOW! Join our session number 854👇 How: Tandem or solo presentations When: Abstracts due Feb 8th (oral) or Apr 8th (poster) Is Rome too far? EAA offers online participation Submit at submissions.e-a-a.org/eaa202… More info e-a-a.org/EAA2024
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💻🧵 "People underestimate how impactful @scikit_learn continues to be" — @fchollet nitter.cf/fchollet/status/172718… This is a crucial point that I would like to illustrate with a few figures Full post: gael-varoquaux.info/programm… And thread below 👇 1/6
People underestimate how impactful Scikit-Learn continues to be.
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The evolution of the English language over a 1,000-year time span traces back to the 5th century when England was invaded by different tribes, including the Angles, Jutes, Saxons, and Frisians. Their languages produced what we know today as Anglo-Saxon or Old English, which sounded similar to German. In the 8th, 9th, and 10th centuries, invasions by the Vikings of Denmark, Norway, and Sweden brought another form of the same Germanic language, Old Norse, which mixed with Old English. In the year 1066, French forces led by William the Conqueror conquered England. Over the next 300 years, thousands of French words entered the English language, especially those related to governance and food. During the English Renaissance, many Latin-based words also entered the language, partly due to English poets, writers, and playwrights. Shakespeare, for instance, wrote plays set in Italy, such as "Romeo and Juliet," "The Merchant of Venice," and "Julius Caesar." By the mid-1500s, a modern-day English speaker would be able to communicate with some patience and concentration. While there would be some archaic pronunciations, shifting meanings, and evolving figures of speech, the language overall would be recognizable.
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Maxime Borry retweeted
There was a superb study of honesty around the world in 2019. Leave 17,000 wallets (with contact email) containing various sums of money in 355 cities across 40 countries. Would finders email the owner? The result: rates of honesty vary a LOT.
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Maxime Borry retweeted
Anybody still our there? Interested in a postdoc position in human microbiome evolution using longitudinal whole genome and metagenomic data at large scale? Join us in Berlin at the @mpiib_berlin. DM or email me with questions you may have. Please RT. mpiib-berlin.mpg.de/2153816/…
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Had such a great time at my first #SPAAM meeting! Thank you to the organizers for creating such a welcoming community and informative workshop!
Here is our family picture from #SPAAM5 meeting! 😍
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Maxime Borry retweeted
Here's today's Friday tip🏖️: Did you know that Ibis works seamlessly with @streamlit letting you create apps with your data in a few lines of code❤️ Here's an example of creating a Movie Suggestions app from a @duckdb table filtering genres🍿 Learn more ibis-project.org/how_to/stre…
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Maxime Borry retweeted
In our study published today in @ScienceMagazine, we provide a proof of concept for the potential use of ancient microbes as a source for developing new drugs by synthesising previously unknown metabolites from reconstructed gene clusters. science.org/doi/10.1126/scie…
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Maxime Borry retweeted
#math meme
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Single-molecule protein sequencing !!! Protein sequencing will soon be as common and easy as DNA sequencing - amazing research and medical applications Very proud to work with this amazing team @JMRothberg @Quantum_Si @molhorizons @uowresearch science.org/doi/10.1126/scie…
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The new Steve Jobs (from Roma) ehehehe
This project is getting bigger and bigger 😆 #NextflowSummit
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