Stephen Piccolo (@stevepiccolo) header
Stephen Piccolo (@stevepiccolo) profile picture

Associate Professor of Biology at Brigham Young University in Provo, UT (USA). Bioinformatics, genomics, data science, informatics education (opinions my own).

Utah
Joined May 2009
Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)Photo by Stephen Piccolo (@stevepiccolo)
Its official. I am now Dr. Nwosu🥳 Successfully defended my PhD in #bioinformatics at @BYU. Super grateful to my advisor @stevepiccolo for taking a chance on this former wet lab biologist and making a bioinformatician out of me. Looking for #postdoc positions. Please RT
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Stephen Piccolo retweeted
Graduating with a PhD in bioinformatics, and looking for postdoc positions in the US. Proficient in R, Python, Linux, ML and Docker. See github.com/ifynwosu for recent projects, and excited to work on new projects. Please RT and share. #postdoc #Bioinformatics
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Historic. Jasmin Paris becomes the first woman to finish all five loops of the Barkley Marathons. Seconds to spare. She's the 20th person ever to finish the race in its 38-year history #BM100
Jasmin Paris @JasminKParis finished loop five of the #BM100 in 59:58:21.
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#OnlineFirst: Integrating Clinical Cancer and PTM #Proteomics Data Identifies an ACK1 #Kinase Activation Mechanism, by Balasooriya, @andersenlab et al. bit.ly/3QRUEYx @stevepiccolo @BYU @MassGeneralNews @harvardmed @UofUMedicine @NDSU
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📢Don't miss the ISCBacademy webinar on 🗓️Thu, Nov 9 at 11 am EDT hosted by @ISCBedu. @stevepiccolo will talk about “Empirical evaluations of large language models for #bioinformatics #education and research”. ℹ️to connect at iscb.org/iscbacademy. #training #ML #LLM
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The latest paper from our lab. We expanded on the analyses from the earlier preprint. "Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course" buff.ly/45iXk54 #ai #llm #bioinformatics #csed
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This paper is the result of a huge effort by Ifeanyi to curate and annotate publicly available #transcriptomics datasets from #breastcancer patients. The datasets are now more findable, interoperable, and reusable. Please use the data and pass it along to others! #fairdata
Replying to @Iffynwosu
We create a reproducible, computational pipeline to download the data, perform quality checks, renormalize the raw gene-expression measurements, and assign gene identifiers from multiple databases.
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This scares me a lot. "AI-Controlled Drone Goes Rogue, 'Kills' Human Operator in USAF Simulated Test" buff.ly/43A8imr
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Pretty awesome survey of what ChatGPT can do: arxiv.org/abs/2303.13528. We've changed our graduate bioinformatics class to allow/encourage LLMs, it's nice to be able to focus on the bigger picture in homework questions (+ edge cases).
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I saw that @BYU had its sprinklers on already. Given the great need of the Great Salt Lake and the reservoirs, please, let’s all hold off on watering grass for a bit longer.
The Weekly Lawn Watering Guide is back! Obviously this won't be needed for most of you yet, but you can check our site each Friday to see what the recommendations are for watering your lawns. This guide is based on local precipitation & conditions data: bit.ly/weeklywatering
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This reinforces what I've been saying for a while now: all bioinformatics researchers should be using ChatGPT and similar tools.
"Many bioinformatics programming tasks can be automated with ChatGPT" buff.ly/3KEX9sR (a preprint with original research findings that I wrote with colleagues). Before drawing conclusions, give it a read (including the Discussion section)!
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"Many bioinformatics programming tasks can be automated with ChatGPT" buff.ly/3KEX9sR (a preprint with original research findings that I wrote with colleagues). Before drawing conclusions, give it a read (including the Discussion section)!
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I just uploaded the data and code from the paper on the arXiv.org site.
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I want to go on the record with my prediction that an unusually large number of people will finish the Barkley marathons this year. At least 5, maybe more. #bm100
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Clearly, I was wrong, but hopefully we will have multiple finishers... #BM100
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People with more extreme attitudes towards science have self-confidence in their understanding of science, even if this is not justified buff.ly/3XD0Pk3
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Say the developers who quickly move to a different company before they have to maintain said code.
Bad code has made more money than good code ever will
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I have to remember this statement by Niels Bohr: "The opposite of a true statement is a false statement, but the opposite of a profound truth is another profound truth."
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