Developing computational algorithms for genomic medicine (tuberculosis/cancer genomics and clinical metagenomics).
Boston, MA
Joined August 2012
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Excited that this work from our group is finally through peer review! Characterization of longitudinal nasopharyngeal microbiome patterns in maternally HIV-exposed Zambian infants gatesopenresearch.org/articl…
A cool paper from our group on reproducibility in TB gene signature analysis: bmcinfectdis.biomedcentral.c…
This paper is a little different than we usually publish, but we helped with some complex batch effect correction:
sciencedirect.com/science/ar…
Wow! Finally published! This took a long time to get done! Nice work @rotemlapidot and @tylerfaits! Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory.... Lapidot R et al., published by Gates Open Research, gatesopenresearch.org/articl…
Students in #datascience: it's not too late to register for our student-focused conference this May, to talk science, learn new skills, connect with industry, and experience beautiful Southern Utah! (Faculty, send your students!) redrockdatascience.com
Students in Data Science! Here is a conference for you! Come join us in for science, learning, networking, while experiencing the outdoors and beauty of Southern Utah! Conference information and registration link is in the comments! #DataScience #redrockdatascience
Happy to share this exciting publication from our group! @crandallkeith nature.com/articles/s41598-0…
Excited for our new paper on our work studying on the developing microbiome and associated infectious disease pathogenesis in Zambia: journals.lww.com/pidj/Fullte…
Shout out to our new publication with @JessicaLeibler! Its is gaining momentum: already an Altmetric score of 340, 42 news outlets have picked it up, including NPR: onlinelibrary.wiley.com/doi/…
npr.org/sections/goatsandsod…
Here is a link to the paper: onlinelibrary.wiley.com/doi/…
Super excited to publish this work in Frontiers in Immunology! frontiersin.org/articles/10.…
Excited for this publication from our group! Will be the basis for a lot of our upcoming TB biomarker work! academic.oup.com/cid/advance…
Here is a really fun and exctiign paper we have posted on medRviv! Hopng to get it peer reviewed soon! medrxiv.org/content/10.1101/…
So excited for this paper! We spent a long time on it and I think it has some important conclusions! Great job @li_tenglong @yuqingzBU academic.oup.com/biostatisti…
Our paper for our animalcules microbiome analysis toolkit is now live! Nice teamwork @jasonzhao0307 @MontiLab @dsegre @BU_CBM microbiomejournal.biomedcent…
Just realized that I never tweeted about this exciting and important published work from our group by @yuqingzBU! When is it best to merge batches of data, and when to learn from each batch and ensemble the results?! Read here: academic.oup.com/bioinformat…
Our paper on profiling TB signatures is finally available! bmcinfectdis.biomedcentral.c…
Have been working on this one for a while. Glad to get it out and hope it makes a difference! biorxiv.org/content/10.1101/…
Super excited for this one to finally be out! Nice work @yuqingzBU ComBat-seq : batch effect adjustment for RNA-seq count data academic.oup.com/nargab/arti…